All data from 3dsnp including high-order modified predictions can be accessed through FTP.
You could also click links in the following table.
PS: If you have any questions or would like to access additional data, please leave a message.
| Data | Format | Link |
|---|---|---|
| dbSNP154 | Vcf | example: chr1 |
| HGSVC2 | Vcf | pangenie_merged_bi_nosnvs.integrated_callset.hg19 |
| dbSNP153 | BigBed | dbSnp153Common.bb |
| Gene annotations | GFF | GCF_000001405.25_GRCh37.p13_genomic |
| Gene annotations | RefSeq | ncbiRefSeq |
| Assembly | Fasta | hg19.fa |
| ENCODE | BigWig | example: Gm12878 H3k27ac |
| RepeatMasker | BigBed | repeats |
| Fixation index | Bed | example: chr1 AMR |
| xp-NSL | Bed | example: chr1 AMR |
| ClinVar | BigBed | clinvarCnv clinvarMain |
| ClinGen | BigBed | clinGenHaplo clinGenTriplo clinGenGeneDisease |
| scATAC-fetal | BigWig | example: thymus_vascular_endothelial_cells |
| HiC loops | loop | raw: Ventricle_Right mod: Ventricle_Right target: chr17-42337882-DEL-540 Ventricle_Right |